Spark 源码分析之ShuffleMapTask内存数据Spill和合并
更多资源分享
- SPARK 源码分析技术分享(视频汇总套装视频): https://www.bilibili.com/video/av37442139/
- github: https://github.com/opensourceteams/spark-scala-maven
- csdn(汇总视频在线看): https://blog.csdn.net/thinktothings/article/details/84726769
前置条件
- Hadoop版本: Hadoop 2.6.0-cdh5.15.0
- Spark版本: SPARK 1.6.0-cdh5.15.0
- JDK.1.8.0_191
- scala2.10.7
技能标签
- Spark ShuffleMapTask 内存中的数据Spill到临时文件
- 临时文件中的数据是如何定入的,如何按partition升序排序,再按Key升序排序写入(key,value)数据
- 每个临时文件,都存入对应的每个分区有多少个(key,value)对,有多少次流提交数组,数组中保留每次流的大小
- 如何把临时文件合成一个文件
- 如何把内存中的数据和临时文件,进行分区,按key,排序后,再写入合并文件中
内存中数据Spill到磁盘
- ShuffleMapTask进行当前分区的数据读取(此时读的是HDFS的当前分区,注意还有一个reduce分区,也就是ShuffleMapTask输出文件是已经按Reduce分区处理好的)
- SparkEnv指定默认的SortShuffleManager,getWriter()中匹配BaseShuffleHandle对象,返回SortShuffleWriter对象
- SortShuffleWriter,用的是ExternalSorter(外部排序对象进行排序处理),会把rdd.iterator(partition, context)的数据通过iterator插入到ExternalSorter中PartitionedAppendOnlyMap对象中做为内存中的map对象数据,每插入一条(key,value)的数据后,会对当前的内存中的集合进行判断,如果满足溢出文件的条件,就会把内存中的数据写入到SpillFile文件中
- 满中溢出文件的条件是,每插入32条数据,并且,当前集合中的数据估值大于等于5m时,进行一次判断,会通过算法验证对内存的影响,确定是否可以溢出内存中的数据到文件,如果满足就把当前内存中的所有数据写到磁盘spillFile文件中
- SpillFile调用org.apache.spark.util.collection.ExternalSorter.SpillableIterator.spill()方法处理
- WritablePartitionedIterator迭代对象对内存中的数据进行迭代,DiskBlockObjectWriter对象写入磁盘,写入的数据格式为(key,value),不带partition的
- ExternalSorter.spillMemoryIteratorToDisk()这个方法将内存数据迭代对象WritablePartitionedIterator写入到一个临时文件,SpillFile临时文件用DiskBlockObjectWriter对象来写入数据
- 临时文件的格式temp_local_+UUID
- 遍历内存中的数据写入到临时文件,会记录每个临时文件中每个分区的(key,value)各有多少个,elementsPerPartition(partitionId) += 1
如果说数据很大的话,会每默认每10000条数据进行Flush()一次数据到文件中,会记录每一次Flush的数据大小batchSizes入到ArrayBuffer中保存 - 并且在数据写入前,会进行排序,先按key的hash分区,先按partition的升序排序,再按key的升序排序,这样来写入文件中,以保证读取临时文件时可以分隔开每个临时文件的每个分区的数据,对于一个临时文件中一个分区的数据量比较大的话,会按流一批10000个(key,value)进行读取,读取的大小讯出在batchSizes数据中,就样读取的时候就非常方便了
内存数据Spill和合并
- 把数据insertAll()到ExternalSorter中,完成后,此时如果数据大的话,会进行溢出到临时文件的操作,数据写到临时文件后
- 把当前内存中的数据和临时文件中的数据进行合并数据文件,合并后的文件只包含(key,value),并且是按partition升序排序,然后按key升序排序,输出文件名称:ShuffleDataBlockId(shuffleId, mapId, NOOP_REDUCE_ID) + UUID 即:"shuffle_" + shuffleId + "_" + mapId + "_" + reduceId + ".data" + UUID,reduceId为默认值0
- 还会有一份索引文件: "shuffle_" + shuffleId + "_" + mapId + "_" + reduceId + ".index" + "." +UUID,索引文件依次存储每个partition的位置偏移量
- 数据文件的写入分两种情况,一种是直接内存写入,没有溢出临时文件到磁盘中,这种是直接在内存中操作的(数据量相对小些),另外单独分析
- 一种是有磁盘溢出文件的,这种情况是本文重点分析的情况
- ExternalSorter.partitionedIterator()方法可以处理所有磁盘中的临时文件和内存中的文件,返回一个可迭代的对象,里边放的元素为reduce用到的(partition,Iterator(key,value)),迭代器中的数据是按key升序排序的
- 具体是通过ExternalSorter.mergeWithAggregation(),遍历每一个临时文件中当前partition的数据和内存中当前partition的数据,注意,临时文件数据读取时是按partition为0开始依次遍历的
源码分析(内存中数据Spill到磁盘)
ShuffleMapTask
- 调用ShuffleMapTask.runTask()方法处理当前HDFS分区数据
- 调用SparkEnv.get.shuffleManager得到SortShuffleManager
- SortShuffleManager.getWriter()得到SortShuffleWriter
- 调用SortShuffleWriter.write()方法
- SparkEnv.create()
val shortShuffleMgrNames = Map(
"hash" -> "org.apache.spark.shuffle.hash.HashShuffleManager",
"sort" -> "org.apache.spark.shuffle.sort.SortShuffleManager",
"tungsten-sort" -> "org.apache.spark.shuffle.sort.SortShuffleManager")
val shuffleMgrName = conf.get("spark.shuffle.manager", "sort")
val shuffleMgrClass = shortShuffleMgrNames.getOrElse(shuffleMgrName.toLowerCase, shuffleMgrName)
val shuffleManager = instantiateClass[ShuffleManager](shuffleMgrClass)
override def runTask(context: TaskContext): MapStatus = {
// Deserialize the RDD using the broadcast variable.
val deserializeStartTime = System.currentTimeMillis()
val ser = SparkEnv.get.closureSerializer.newInstance()
val (rdd, dep) = ser.deserialize[(RDD[_], ShuffleDependency[_, _, _])](
ByteBuffer.wrap(taskBinary.value), Thread.currentThread.getContextClassLoader)
_executorDeserializeTime = System.currentTimeMillis() - deserializeStartTime
metrics = Some(context.taskMetrics)
var writer: ShuffleWriter[Any, Any] = null
try {
val manager = SparkEnv.get.shuffleManager
writer = manager.getWriter[Any, Any](dep.shuffleHandle, partitionId, context)
writer.write(rdd.iterator(partition, context).asInstanceOf[Iterator[_ <: Product2[Any, Any]]])
writer.stop(success = true).get
} catch {
case e: Exception =>
try {
if (writer != null) {
writer.stop(success = false)
}
} catch {
case e: Exception =>
log.debug("Could not stop writer", e)
}
throw e
}
}
SortShuffleWriter
- 调用SortShuffleWriter.write()方法
- 根据RDDDependency中mapSideCombine是否在map端合并,这个是由算子决定,reduceByKey中mapSideCombine为true,groupByKey中mapSideCombine为false,会new ExternalSorter()外部排序对象进行排序
- 然后把records中的数据插入ExternalSorter对象sorter中,数据来源是HDFS当前的分区
/** Write a bunch of records to this task's output */
override def write(records: Iterator[Product2[K, V]]): Unit = {
sorter = if (dep.mapSideCombine) {
require(dep.aggregator.isDefined, "Map-side combine without Aggregator specified!")
new ExternalSorter[K, V, C](
context, dep.aggregator, Some(dep.partitioner), dep.keyOrdering, dep.serializer)
} else {
// In this case we pass neither an aggregator nor an ordering to the sorter, because we don't
// care whether the keys get sorted in each partition; that will be done on the reduce side
// if the operation being run is sortByKey.
new ExternalSorter[K, V, V](
context, aggregator = None, Some(dep.partitioner), ordering = None, dep.serializer)
}
sorter.insertAll(records)
// Don't bother including the time to open the merged output file in the shuffle write time,
// because it just opens a single file, so is typically too fast to measure accurately
// (see SPARK-3570).
val output = shuffleBlockResolver.getDataFile(dep.shuffleId, mapId)
val tmp = Utils.tempFileWith(output)
try {
val blockId = ShuffleBlockId(dep.shuffleId, mapId, IndexShuffleBlockResolver.NOOP_REDUCE_ID)
val partitionLengths = sorter.writePartitionedFile(blockId, tmp)
shuffleBlockResolver.writeIndexFileAndCommit(dep.shuffleId, mapId, partitionLengths, tmp)
mapStatus = MapStatus(blockManager.shuffleServerId, partitionLengths)
} finally {
if (tmp.exists() && !tmp.delete()) {
logError(s"Error while deleting temp file ${tmp.getAbsolutePath}")
}
}
}
- ExternalSorter.insertAll()方法
- 该方法会把迭代器records中的数据插入到外部排序对象中
- ExternalSorter中的数据是不进行排序的,是以数组的形式存储的,健存的为(partition,key),值为Shuffle之前的RDD链计算结果
在内存中会对相同的key,进行合并操作,就是map端本地合并,合并的函数就是reduceByKey(_+_)这个算子中定义的函数 - maybeSpillCollection方法会判断是否满足磁盘溢出到临时文件,满足条件,会把当前内存中的数据写到磁盘中,写到磁盘中的数据是按partition升序排序,再按key升序排序,就是(key,value)的临时文件,不带partition,但是会记录每个分区的数量elementsPerPartition(partitionId- 记录每一次Flush的数据大小batchSizes入到ArrayBuffer中保存
- 内存中的数据存在PartitionedAppendOnlyMap,记住这个对象,后面排序用到了这个里边的排序算法
@volatile private var map = new PartitionedAppendOnlyMap[K, C]
def insertAll(records: Iterator[Product2[K, V]]): Unit = {
// TODO: stop combining if we find that the reduction factor isn't high
val shouldCombine = aggregator.isDefined
if (shouldCombine) {
// Combine values in-memory first using our AppendOnlyMap
val mergeValue = aggregator.get.mergeValue
val createCombiner = aggregator.get.createCombiner
var kv: Product2[K, V] = null
val update = (hadValue: Boolean, oldValue: C) => {
if (hadValue) mergeValue(oldValue, kv._2) else createCombiner(kv._2)
}
while (records.hasNext) {
addElementsRead()
kv = records.next()
map.changeValue((getPartition(kv._1), kv._1), update)
maybeSpillCollection(usingMap = true)
}
} else {
// Stick values into our buffer
while (records.hasNext) {
addElementsRead()
val kv = records.next()
buffer.insert(getPartition(kv._1), kv._1, kv._2.asInstanceOf[C])
maybeSpillCollection(usingMap = false)
}
}
}
- ExternalSorter.maybeSpillCollection
- estimatedSize当前内存中数据预估占内存大小
- maybeSpill满足Spill条件就把内存中的数据写入到临时文件中
- 调用ExternalSorter.maybeSpill()
/**
* Spill the current in-memory collection to disk if needed.
*
* @param usingMap whether we're using a map or buffer as our current in-memory collection
*/
private def maybeSpillCollection(usingMap: Boolean): Unit = {
var estimatedSize = 0L
if (usingMap) {
estimatedSize = map.estimateSize()
if (maybeSpill(map, estimatedSize)) {
map = new PartitionedAppendOnlyMap[K, C]
}
} else {
estimatedSize = buffer.estimateSize()
if (maybeSpill(buffer, estimatedSize)) {
buffer = new PartitionedPairBuffer[K, C]
}
}
if (estimatedSize > _peakMemoryUsedBytes) {
_peakMemoryUsedBytes = estimatedSize
}
}
- ExternalSorter.maybeSpill()
- 对内存中的数据遍历时,每遍历32个元素,进行判断,当前内存是否大于5m,如果大于5m,再进行内存的计算,如果满足就把内存中的数据写到临时文件中
- 如果满足条件,调用ExternalSorter.spill()方法,将内存中的数据写入临时文件
/**
* Spills the current in-memory collection to disk if needed. Attempts to acquire more
* memory before spilling.
*
* @param collection collection to spill to disk
* @param currentMemory estimated size of the collection in bytes
* @return true if `collection` was spilled to disk; false otherwise
*/
protected def maybeSpill(collection: C, currentMemory: Long): Boolean = {
var shouldSpill = false
if (elementsRead % 32 == 0 && currentMemory >= myMemoryThreshold) {
// Claim up to double our current memory from the shuffle memory pool
val amountToRequest = 2 * currentMemory - myMemoryThreshold
val granted = acquireOnHeapMemory(amountToRequest)
myMemoryThreshold += granted
// If we were granted too little memory to grow further (either tryToAcquire returned 0,
// or we already had more memory than myMemoryThreshold), spill the current collection
shouldSpill = currentMemory >= myMemoryThreshold
}
shouldSpill = shouldSpill || _elementsRead > numElementsForceSpillThreshold
// Actually spill
if (shouldSpill) {
_spillCount += 1
logSpillage(currentMemory)
spill(collection)
_elementsRead = 0
_memoryBytesSpilled += currentMemory
releaseMemory()
}
shouldSpill
}
- ExternalSorter.spill()
- 调用方法collection.destructiveSortedWritablePartitionedIterator进行排序,即调用PartitionedAppendOnlyMap.destructiveSortedWritablePartitionedIterator进行排序()方法排序,最终会调用WritablePartitionedPairCollection.destructiveSortedWritablePartitionedIterator()排序,调用方法WritablePartitionedPairCollection.partitionedDestructiveSortedIterator(),没有实现,调用子类PartitionedAppendOnlyMap.partitionedDestructiveSortedIterator()方法
- 调用方法ExternalSorter.spillMemoryIteratorToDisk() 将磁盘中的数据写入到spillFile临时文件中
/**
* Spill our in-memory collection to a sorted file that we can merge later.
* We add this file into `spilledFiles` to find it later.
*
* @param collection whichever collection we're using (map or buffer)
*/
override protected[this] def spill(collection: WritablePartitionedPairCollection[K, C]): Unit = {
val inMemoryIterator = collection.destructiveSortedWritablePartitionedIterator(comparator)
val spillFile = spillMemoryIteratorToDisk(inMemoryIterator)
spills.append(spillFile)
}
- PartitionedAppendOnlyMap.partitionedDestructiveSortedIterator()调用排序算法WritablePartitionedPairCollection.partitionKeyComparator
- 即先按分区数的升序排序,再按key的升序排序
/**
* Implementation of WritablePartitionedPairCollection that wraps a map in which the keys are tuples
* of (partition ID, K)
*/
private[spark] class PartitionedAppendOnlyMap[K, V]
extends SizeTrackingAppendOnlyMap[(Int, K), V] with WritablePartitionedPairCollection[K, V] {
def partitionedDestructiveSortedIterator(keyComparator: Option[Comparator[K]])
: Iterator[((Int, K), V)] = {
val comparator = keyComparator.map(partitionKeyComparator).getOrElse(partitionComparator)
destructiveSortedIterator(comparator)
}
def insert(partition: Int, key: K, value: V): Unit = {
update((partition, key), value)
}
}
/**
* A comparator for (Int, K) pairs that orders them both by their partition ID and a key ordering.
*/
def partitionKeyComparator[K](keyComparator: Comparator[K]): Comparator[(Int, K)] = {
new Comparator[(Int, K)] {
override def compare(a: (Int, K), b: (Int, K)): Int = {
val partitionDiff = a._1 - b._1
if (partitionDiff != 0) {
partitionDiff
} else {
keyComparator.compare(a._2, b._2)
}
}
}
}
}
- ExternalSorter.spillMemoryIteratorToDisk()
- 创建blockId : temp_shuffle_ + UUID
- 溢出到磁盘临时文件: temp_shuffle_ + UUID
- 遍历内存数据inMemoryIterator写入到磁盘临时文件spillFile
- 遍历内存中的数据写入到临时文件,会记录每个临时文件中每个分区的(key,value)各有多少个,elementsPerPartition(partitionId) 如果说数据很大的话,会每默认每10000条数据进行Flush()一次数据到文件中,会记录每一次Flush的数据大小batchSizes入到ArrayBuffer中保存
/**
* Spill contents of in-memory iterator to a temporary file on disk.
*/
private[this] def spillMemoryIteratorToDisk(inMemoryIterator: WritablePartitionedIterator)
: SpilledFile = {
// Because these files may be read during shuffle, their compression must be controlled by
// spark.shuffle.compress instead of spark.shuffle.spill.compress, so we need to use
// createTempShuffleBlock here; see SPARK-3426 for more context.
val (blockId, file) = diskBlockManager.createTempShuffleBlock()
// These variables are reset after each flush
var objectsWritten: Long = 0
var spillMetrics: ShuffleWriteMetrics = null
var writer: DiskBlockObjectWriter = null
def openWriter(): Unit = {
assert (writer == null && spillMetrics == null)
spillMetrics = new ShuffleWriteMetrics
writer = blockManager.getDiskWriter(blockId, file, serInstance, fileBufferSize, spillMetrics)
}
openWriter()
// List of batch sizes (bytes) in the order they are written to disk
val batchSizes = new ArrayBuffer[Long]
// How many elements we have in each partition
val elementsPerPartition = new Array[Long](numPartitions)
// Flush the disk writer's contents to disk, and update relevant variables.
// The writer is closed at the end of this process, and cannot be reused.
def flush(): Unit = {
val w = writer
writer = null
w.commitAndClose()
_diskBytesSpilled += spillMetrics.shuffleBytesWritten
batchSizes.append(spillMetrics.shuffleBytesWritten)
spillMetrics = null
objectsWritten = 0
}
var success = false
try {
while (inMemoryIterator.hasNext) {
val partitionId = inMemoryIterator.nextPartition()
require(partitionId >= 0 && partitionId < numPartitions,
s"partition Id: ${partitionId} should be in the range [0, ${numPartitions})")
inMemoryIterator.writeNext(writer)
elementsPerPartition(partitionId) += 1
objectsWritten += 1
if (objectsWritten == serializerBatchSize) {
flush()
openWriter()
}
}
if (objectsWritten > 0) {
flush()
} else if (writer != null) {
val w = writer
writer = null
w.revertPartialWritesAndClose()
}
success = true
} finally {
if (!success) {
// This code path only happens if an exception was thrown above before we set success;
// close our stuff and let the exception be thrown further
if (writer != null) {
writer.revertPartialWritesAndClose()
}
if (file.exists()) {
if (!file.delete()) {
logWarning(s"Error deleting ${file}")
}
}
}
}
SpilledFile(file, blockId, batchSizes.toArray, elementsPerPartition)
}
源码分析(内存数据Spill合并)
SortShuffleWriter.insertAll
- 即内存中的数据,如果有溢出,写入到临时文件后,可能会有多个临时文件(看数据的大小)
- 这时要开始从所有的临时文件中,shuffle出按给reduce输入数据(partition,Iterator),相当于要对多个临时文件进行合成一个文件,合成的结果按partition升序排序,再按Key升序排序
- SortShuffleWriter.write
- 得到合成文件shuffleBlockResolver.getDataFile : 格式如 "shuffle_" + shuffleId + "_" + mapId + "_" + reduceId + ".data" + "." + UUID,reduceId为默认的0
- 调用关键方法ExternalSorter的sorter.writePartitionedFile,这才是真正合成文件的方法
- 返回值partitionLengths,即为数据文件中对应索引文件按分区从0到最大分区,每个分区的数据大小的数组
/** Write a bunch of records to this task's output */
override def write(records: Iterator[Product2[K, V]]): Unit = {
sorter = if (dep.mapSideCombine) {
require(dep.aggregator.isDefined, "Map-side combine without Aggregator specified!")
new ExternalSorter[K, V, C](
context, dep.aggregator, Some(dep.partitioner), dep.keyOrdering, dep.serializer)
} else {
// In this case we pass neither an aggregator nor an ordering to the sorter, because we don't
// care whether the keys get sorted in each partition; that will be done on the reduce side
// if the operation being run is sortByKey.
new ExternalSorter[K, V, V](
context, aggregator = None, Some(dep.partitioner), ordering = None, dep.serializer)
}
sorter.insertAll(records)
// Don't bother including the time to open the merged output file in the shuffle write time,
// because it just opens a single file, so is typically too fast to measure accurately
// (see SPARK-3570).
val output = shuffleBlockResolver.getDataFile(dep.shuffleId, mapId)
val tmp = Utils.tempFileWith(output)
try {
val blockId = ShuffleBlockId(dep.shuffleId, mapId, IndexShuffleBlockResolver.NOOP_REDUCE_ID)
val partitionLengths = sorter.writePartitionedFile(blockId, tmp)
shuffleBlockResolver.writeIndexFileAndCommit(dep.shuffleId, mapId, partitionLengths, tmp)
mapStatus = MapStatus(blockManager.shuffleServerId, partitionLengths)
} finally {
if (tmp.exists() && !tmp.delete()) {
logError(s"Error while deleting temp file ${tmp.getAbsolutePath}")
}
}
}
- ExternalSorter.writePartitionedFile
- 按方法名直译,把数据写入已分区的文件中
- 如果没有spill文件,直接按ExternalSorter在内存中排序,用的是TimSort排序算法排序,单独合出来讲,这里不详细讲
- 如果有spill文件,是我们重点分析的,这个时候,调用this.partitionedIterator按回按[(partition,Iterator)],按分区升序排序,按(key,value)中key升序排序的数据,并键中方法this.partitionedIterator()
- 写入合并文件中,并返回写入合并文件中每个分区的长度,放到lengths数组中,数组索引就是partition
/**
* Write all the data added into this ExternalSorter into a file in the disk store. This is
* called by the SortShuffleWriter.
*
* @param blockId block ID to write to. The index file will be blockId.name + ".index".
* @return array of lengths, in bytes, of each partition of the file (used by map output tracker)
*/
def writePartitionedFile(
blockId: BlockId,
outputFile: File): Array[Long] = {
// Track location of each range in the output file
val lengths = new Array[Long](numPartitions)
if (spills.isEmpty) {
// Case where we only have in-memory data
val collection = if (aggregator.isDefined) map else buffer
val it = collection.destructiveSortedWritablePartitionedIterator(comparator)
while (it.hasNext) {
val writer = blockManager.getDiskWriter(blockId, outputFile, serInstance, fileBufferSize,
context.taskMetrics.shuffleWriteMetrics.get)
val partitionId = it.nextPartition()
while (it.hasNext && it.nextPartition() == partitionId) {
it.writeNext(writer)
}
writer.commitAndClose()
val segment = writer.fileSegment()
lengths(partitionId) = segment.length
}
} else {
// We must perform merge-sort; get an iterator by partition and write everything directly.
for ((id, elements) <- this.partitionedIterator) {
if (elements.hasNext) {
val writer = blockManager.getDiskWriter(blockId, outputFile, serInstance, fileBufferSize,
context.taskMetrics.shuffleWriteMetrics.get)
for (elem <- elements) {
writer.write(elem._1, elem._2)
}
writer.commitAndClose()
val segment = writer.fileSegment()
lengths(id) = segment.length
}
}
}
context.taskMetrics().incMemoryBytesSpilled(memoryBytesSpilled)
context.taskMetrics().incDiskBytesSpilled(diskBytesSpilled)
context.internalMetricsToAccumulators(
InternalAccumulator.PEAK_EXECUTION_MEMORY).add(peakMemoryUsedBytes)
lengths
}
- this.partitionedIterator()
- 直接调用ExternalSorter.merge()方法
- 临时文件参数spills
- 内存文件排序算法在这里调用collection.partitionedDestructiveSortedIterator(comparator),实际调的是PartitionedAppendOnlyMap.partitionedDestructiveSortedIterator,定义了排序算法partitionKeyComparator,即按partition升序排序,再按key升序排序
/**
* Return an iterator over all the data written to this object, grouped by partition and
* aggregated by the requested aggregator. For each partition we then have an iterator over its
* contents, and these are expected to be accessed in order (you can't "skip ahead" to one
* partition without reading the previous one). Guaranteed to return a key-value pair for each
* partition, in order of partition ID.
*
* For now, we just merge all the spilled files in once pass, but this can be modified to
* support hierarchical merging.
* Exposed for testing.
*/
def partitionedIterator: Iterator[(Int, Iterator[Product2[K, C]])] = {
val usingMap = aggregator.isDefined
val collection: WritablePartitionedPairCollection[K, C] = if (usingMap) map else buffer
if (spills.isEmpty) {
// Special case: if we have only in-memory data, we don't need to merge streams, and perhaps
// we don't even need to sort by anything other than partition ID
if (!ordering.isDefined) {
// The user hasn't requested sorted keys, so only sort by partition ID, not key
groupByPartition(destructiveIterator(collection.partitionedDestructiveSortedIterator(None)))
} else {
// We do need to sort by both partition ID and key
groupByPartition(destructiveIterator(
collection.partitionedDestructiveSortedIterator(Some(keyComparator))))
}
} else {
// Merge spilled and in-memory data
merge(spills, destructiveIterator(
collection.partitionedDestructiveSortedIterator(comparator)))
}
}
- ExternalSorter.merge()方法
- 0 until numPartitions 从0到numPartitions(不包含)分区循环调用
- IteratorForPartition(p, inMemBuffered),每次取内存中的p分区的数据
- readers是每个分区是读所有的临时文件(因为每份临时文件,都有可能包含p分区的数据),
- readers.map(_.readNextPartition())该方法内部用的是每次调一个分区的数据,从0开始,刚好对应的是p分区的数据
- readNextPartition方法即调用SpillReader.readNextPartition()方法
- 对p分区的数据进行mergeWithAggregation合并后,再写入到合并文件中
/**
* Merge a sequence of sorted files, giving an iterator over partitions and then over elements
* inside each partition. This can be used to either write out a new file or return data to
* the user.
*
* Returns an iterator over all the data written to this object, grouped by partition. For each
* partition we then have an iterator over its contents, and these are expected to be accessed
* in order (you can't "skip ahead" to one partition without reading the previous one).
* Guaranteed to return a key-value pair for each partition, in order of partition ID.
*/
private def merge(spills: Seq[SpilledFile], inMemory: Iterator[((Int, K), C)])
: Iterator[(Int, Iterator[Product2[K, C]])] = {
val readers = spills.map(new SpillReader(_))
val inMemBuffered = inMemory.buffered
(0 until numPartitions).iterator.map { p =>
val inMemIterator = new IteratorForPartition(p, inMemBuffered)
val iterators = readers.map(_.readNextPartition()) ++ Seq(inMemIterator)
if (aggregator.isDefined) {
// Perform partial aggregation across partitions
(p, mergeWithAggregation(
iterators, aggregator.get.mergeCombiners, keyComparator, ordering.isDefined))
} else if (ordering.isDefined) {
// No aggregator given, but we have an ordering (e.g. used by reduce tasks in sortByKey);
// sort the elements without trying to merge them
(p, mergeSort(iterators, ordering.get))
} else {
(p, iterators.iterator.flatten)
}
}
}
- SpillReader.readNextPartition()
- readNextItem()是真正读数临时文件的方法,
- deserializeStream每次读取一个流大小,这个大小时在spill输出文件时写到batchSizes中的,某个是每个分区写一次流,如果分区中的数据很大,就按10000条数据进行一次流,这样每满10000次就再读一次流,这样就可以把当前分区里边的多少提交流全部读完
- 一进来就执行nextBatchStream()方法,该方法是按数组batchSizes存储着每次写入流时的数据大小
- val batchOffsets = spill.serializerBatchSizes.scanLeft(0L)(_ + _)这个其实取到的值,就刚好是每次流的一位置偏移量,后面的偏移量,刚好是前面所有偏移量之和
- 当前分区的流读完时,就为空,就相当于当前分区的数据全部读完了
- 当partitionId=numPartitions,finished= true说明所有分区的所有文件全部读完了
def readNextPartition(): Iterator[Product2[K, C]] = new Iterator[Product2[K, C]] {
val myPartition = nextPartitionToRead
nextPartitionToRead += 1
override def hasNext: Boolean = {
if (nextItem == null) {
nextItem = readNextItem()
if (nextItem == null) {
return false
}
}
assert(lastPartitionId >= myPartition)
// Check that we're still in the right partition; note that readNextItem will have returned
// null at EOF above so we would've returned false there
lastPartitionId == myPartition
}
override def next(): Product2[K, C] = {
if (!hasNext) {
throw new NoSuchElementException
}
val item = nextItem
nextItem = null
item
}
}
/**
* Return the next (K, C) pair from the deserialization stream and update partitionId,
* indexInPartition, indexInBatch and such to match its location.
*
* If the current batch is drained, construct a stream for the next batch and read from it.
* If no more pairs are left, return null.
*/
private def readNextItem(): (K, C) = {
if (finished || deserializeStream == null) {
return null
}
val k = deserializeStream.readKey().asInstanceOf[K]
val c = deserializeStream.readValue().asInstanceOf[C]
lastPartitionId = partitionId
// Start reading the next batch if we're done with this one
indexInBatch += 1
if (indexInBatch == serializerBatchSize) {
indexInBatch = 0
deserializeStream = nextBatchStream()
}
// Update the partition location of the element we're reading
indexInPartition += 1
skipToNextPartition()
// If we've finished reading the last partition, remember that we're done
if (partitionId == numPartitions) {
finished = true
if (deserializeStream != null) {
deserializeStream.close()
}
}
(k, c)
}
/** Construct a stream that only reads from the next batch */
def nextBatchStream(): DeserializationStream = {
// Note that batchOffsets.length = numBatches + 1 since we did a scan above; check whether
// we're still in a valid batch.
if (batchId < batchOffsets.length - 1) {
if (deserializeStream != null) {
deserializeStream.close()
fileStream.close()
deserializeStream = null
fileStream = null
}
val start = batchOffsets(batchId)
fileStream = new FileInputStream(spill.file)
fileStream.getChannel.position(start)
batchId += 1
val end = batchOffsets(batchId)
assert(end >= start, "start = " + start + ", end = " + end +
", batchOffsets = " + batchOffsets.mkString("[", ", ", "]"))
val bufferedStream = new BufferedInputStream(ByteStreams.limit(fileStream, end - start))
val sparkConf = SparkEnv.get.conf
val stream = blockManager.wrapForCompression(spill.blockId,
CryptoStreamUtils.wrapForEncryption(bufferedStream, sparkConf))
serInstance.deserializeStream(stream)
} else {
// No more batches left
cleanup()
null
}
}
end
end