windows使用cygwin编译Xyce
整体流程如Xyce构建教程大致类似,我这里把我编译的步骤写下来,方便大家食用
环境准备:
库准备
在进行Xyce编译之前我们需要准备一些库,如下
- gcc-core
- gcc-g++
- gcc-fortran
- make
- cmake
- liblapack0
- liblapack-devel
- libsuitesparseconfig-devel
- libamd-devel
- bison
- flex
- fftw3
- libfftw3-devel
- libtool
- m4
- autoconf
- automake
- git
以上库使用下面命令安装
apt-cyg install 库名称
apt-cyg无法使用
如果你的apt-cyg命令无法使用,请按照如下方式
- 第一步:在cygwin安装目录下的bin文件夹中创建apt-cyg文件,并且删除后缀
- 第二步:复制下面的代码到文件中,并且使用notepad++将文件格式修改为unix,修改步骤如下:编辑→文档格式转换→转为Unix .
#!/bin/bash # apt-cyg: install tool for Cygwin similar to debian apt-get # # The MIT License (MIT) # # Copyright (c) 2013 Trans-code Design # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in # all copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN # THE SOFTWARE. if [ ${BASH_VERSINFO}${BASH_VERSINFO[1]} -lt 42 ] then echo 'Bash version 4.2+ required' exit fi usage="\ NAME apt-cyg - package manager utility SYNOPSIS apt-cyg [operation] [options] [targets] DESCRIPTION apt-cyg is a package management utility that tracks installed packages on a Cygwin system. Invoking apt-cyg involves specifying an operation with any potential options and targets to operate on. A target is usually a package name, file name, URL, or a search string. Targets can be provided as command line arguments. OPERATIONS install Install package(s). remove Remove package(s) from the system. update Download a fresh copy of the master package list (setup.ini) from the server defined in setup.rc. download Retrieve package(s) from the server, but do not install/upgrade anything. show Display information on given package(s). depends Produce a dependency tree for a package. rdepends Produce a tree of packages that depend on the named package. list Search each locally-installed package for names that match regexp. If no package names are provided in the command line, all installed packages will be queried. listall This will search each package in the master package list (setup.ini) for names that match regexp. category Display all packages that are members of a named category. listfiles List all files owned by a given package. Multiple packages can be specified on the command line. search Search for downloaded packages that own the specified file(s). The path can be relative or absolute, and one or more files can be specified. searchall Search cygwin.com to retrieve file information about packages. The provided target is considered to be a filename and searchall will return the package(s) which contain this file. mirror Set the mirror; a full URL to a location where the database, packages, and signatures for this repository can be found. If no URL is provided, display current mirror. cache Set the package cache directory. If a file is not found in cache directory, it will be downloaded. Unix and Windows forms are accepted, as well as absolute or regular paths. If no directory is provided, display current cache. OPTIONS --nodeps Specify this option to skip all dependency checks. --version Display version and exit. " version="\ apt-cyg version 1 The MIT License (MIT) Copyright (c) 2005-9 Stephen Jungels " function wget { if command wget -h &>/dev/null then command wget "$@" else warn wget is not installed, using lynx as fallback set "${*: -1}" lynx -source "$1" > "${1##*/}" fi } function find-workspace { # default working directory and mirror # work wherever setup worked last, if possible cache=$(awk ' BEGIN { RS = "\n\\<" FS = "\n\t" } $1 == "last-cache" { print $2 } ' /etc/setup/setup.rc) mirror=$(awk ' /last-mirror/ { getline print $1 } ' /etc/setup/setup.rc) mirrordir=$(sed ' s / %2f g s : %3a g ' <<< "$mirror") mkdir -p "$cache/$mirrordir/$arch" cd "$cache/$mirrordir/$arch" if [ -e setup.ini ] then return 0 else get-setup return 1 fi } function get-setup { touch setup.ini mv setup.ini setup.ini-save wget -N $mirror/$arch/setup.bz2 if [ -e setup.bz2 ] then bunzip2 setup.bz2 mv setup setup.ini echo Updated setup.ini else echo Error updating setup.ini, reverting mv setup.ini-save setup.ini fi } function check-packages { if [[ $pks ]] then return 0 else echo No packages found. return 1 fi } function warn { printf '\e[1;31m%s\e[m\n' "$*" >&2 } function apt-update { if find-workspace then get-setup fi } function apt-category { check-packages find-workspace for pkg in "${pks[@]}" do awk ' $1 == "@" { pck = $2 } $1 == "category:" && $0 ~ query { print pck } ' query="$pks" setup.ini done } function apt-list { local sbq for pkg in "${pks[@]}" do let sbq++ && echo awk 'NR>1 && $1~pkg && $0=$1' pkg="$pkg" /etc/setup/installed.db done let sbq && return awk 'NR>1 && $0=$1' /etc/setup/installed.db } function apt-listall { check-packages find-workspace local sbq for pkg in "${pks[@]}" do let sbq++ && echo awk '$1~pkg && $0=$1' RS='\n\n@ ' FS='\n' pkg="$pkg" setup.ini done } function apt-listfiles { check-packages find-workspace local pkg sbq for pkg in "${pks[@]}" do (( sbq++ )) && echo if [ ! -e /etc/setup/"$pkg".lst.gz ] then download "$pkg" fi gzip -cd /etc/setup/"$pkg".lst.gz done } function apt-show { find-workspace check-packages for pkg in "${pks[@]}" do (( notfirst++ )) && echo awk ' $1 == query { print fd++ } END { if (! fd) print "Unable to locate package " query } ' RS='\n\n@ ' FS='\n' query="$pkg" setup.ini done } function apt-depends { find-workspace check-packages for pkg in "${pks[@]}" do awk ' @include "join" $1 == "@" { apg = $2 } $1 == "requires:" { for (z=2; z<=NF; z++) reqs[apg][z-1] = $z } END { prpg(ENVIRON["pkg"]) } function smartmatch(small, large, values) { for (each in large) values[large[each]] return small in values } function prpg(fpg) { if (smartmatch(fpg, spath)) return spath[length(spath)+1] = fpg print join(spath, 1, length(spath), " > ") if (isarray(reqs[fpg])) for (each in reqs[fpg]) prpg(reqs[fpg][each]) delete spath[length(spath)] } ' setup.ini done } function apt-rdepends { find-workspace for pkg in "${pks[@]}" do awk ' @include "join" $1 == "@" { apg = $2 } $1 == "requires:" { for (z=2; z<=NF; z++) reqs[$z][length(reqs[$z])+1] = apg } END { prpg(ENVIRON["pkg"]) } function smartmatch(small, large, values) { for (each in large) values[large[each]] return small in values } function prpg(fpg) { if (smartmatch(fpg, spath)) return spath[length(spath)+1] = fpg print join(spath, 1, length(spath), " < ") if (isarray(reqs[fpg])) for (each in reqs[fpg]) prpg(reqs[fpg][each]) delete spath[length(spath)] } ' setup.ini done } function apt-download { check-packages find-workspace local pkg sbq for pkg in "${pks[@]}" do (( sbq++ )) && echo download "$pkg" done } function download { local pkg digest digactual pkg=$1 # look for package and save desc file awk '$1 == pc' RS='\n\n@ ' FS='\n' pc=$pkg setup.ini > desc if [ ! -s desc ] then echo Unable to locate package $pkg exit 1 fi # download and unpack the bz2 or xz file # pick the latest version, which comes first set -- $(awk '$1 == "install:"' desc) if (( ! $# )) then echo 'Could not find "install" in package description: obsolete package?' exit 1 fi dn=$(dirname $2) bn=$(basename $2) # check the md5 digest=$4 case ${#digest} in 32) hash=md5sum ;; 128) hash=sha512sum ;; esac mkdir -p "$cache/$mirrordir/$dn" cd "$cache/$mirrordir/$dn" if ! test -e $bn || ! $hash -c <<< "$digest $bn" then wget -O $bn $mirror/$dn/$bn $hash -c <<< "$digest $bn" || exit fi tar tf $bn | gzip > /etc/setup/"$pkg".lst.gz cd ~- mv desc "$cache/$mirrordir/$dn" echo $dn $bn > /tmp/dwn } function apt-search { check-packages echo Searching downloaded packages... for pkg in "${pks[@]}" do key=$(type -P "$pkg" | sed s./..) [[ $key ]] || key=$pkg for manifest in /etc/setup/*.lst.gz do if gzip -cd $manifest | grep -q "$key" then package=$(sed ' s,/etc/setup/,, s,.lst.gz,, ' <<< $manifest) echo $package fi done done } function apt-searchall { cd /tmp for pkg in "${pks[@]}" do printf -v qs 'text=1&arch=%s&grep=%s' $arch "$pkg" wget -O matches cygwin.com/cgi-bin2/package-grep.cgi?"$qs" awk ' NR == 1 {next} mc[$1]++ {next} /-debuginfo-/ {next} /^cygwin32-/ {next} {print $1} ' FS=-[[:digit:]] matches done } function apt-install { check-packages find-workspace local pkg dn bn requires wr package sbq script for pkg in "${pks[@]}" do if grep -q "^$pkg " /etc/setup/installed.db then echo Package $pkg is already installed, skipping continue fi (( sbq++ )) && echo echo Installing $pkg download $pkg read dn bn </tmp/dwn echo Unpacking... cd "$cache/$mirrordir/$dn" tar -x -C / -f $bn # update the package database awk ' ins != 1 && pkg < $1 { print pkg, bz, 0 ins = 1 } 1 END { if (ins != 1) print pkg, bz, 0 } ' pkg="$pkg" bz=$bn /etc/setup/installed.db > /tmp/awk.$$ mv /etc/setup/installed.db /etc/setup/installed.db-save mv /tmp/awk.$$ /etc/setup/installed.db [ -v nodeps ] && continue # recursively install required packages requires=$(awk '$1=="requires", $0=$2' FS=': ' desc) cd ~- wr=0 if [[ $requires ]] then echo Package $pkg requires the following packages, installing: echo $requires for package in $requires do if grep -q "^$package " /etc/setup/installed.db then echo Package $package is already installed, skipping continue fi apt-cyg install --noscripts $package || (( wr++ )) done fi if (( wr )) then echo some required packages did not install, continuing fi # run all postinstall scripts [ -v noscripts ] && continue find /etc/postinstall -name '*.sh' | while read script do echo Running $script $script mv $script $script.done done echo Package $pkg installed done } function apt-remove { check-packages cd /etc cygcheck awk bash bunzip2 grep gzip mv sed tar xz > setup/essential.lst for pkg in "${pks[@]}" do if ! grep -q "^$pkg " setup/installed.db then echo Package $pkg is not installed, skipping continue fi if [ ! -e setup/"$pkg".lst.gz ] then warn Package manifest missing, cannot remove $pkg. Exiting exit 1 fi gzip -dk setup/"$pkg".lst.gz awk ' NR == FNR { if ($NF) ess[$NF] next } $NF in ess { exit 1 } ' FS='[/\\\\]' setup/{essential,$pkg}.lst esn=$? if [ $esn = 0 ] then echo Removing $pkg if [ -e preremove/"$pkg".sh ] then preremove/"$pkg".sh rm preremove/"$pkg".sh fi mapfile dt < setup/"$pkg".lst for each in ${dt[*]} do [ -f /$each ] && rm /$each done for each in ${dt[*]} do [ -d /$each ] && rmdir --i /$each done rm -f setup/"$pkg".lst.gz postinstall/"$pkg".sh.done awk -i inplace '$1 != ENVIRON["pkg"]' setup/installed.db echo Package $pkg removed fi rm setup/"$pkg".lst if [ $esn = 1 ] then warn apt-cyg cannot remove package $pkg, exiting exit 1 fi done } function apt-mirror { if [ "$pks" ] then awk -i inplace ' 1 /last-mirror/ { getline print "\t" pks } ' pks="$pks" /etc/setup/setup.rc echo Mirror set to "$pks". else awk ' /last-mirror/ { getline print $1 } ' /etc/setup/setup.rc fi } function apt-cache { if [ "$pks" ] then vas=$(cygpath -aw "$pks") awk -i inplace ' 1 /last-cache/ { getline print "\t" vas } ' vas="${vas//\\/\\\\}" /etc/setup/setup.rc echo Cache set to "$vas". else awk ' /last-cache/ { getline print $1 } ' /etc/setup/setup.rc fi } if [ -p /dev/stdin ] then mapfile -t pks fi # process options until [ $# = 0 ] do case "$1" in --nodeps) nodeps=1 shift ;; --noscripts) noscripts=1 shift ;; --version) printf "$version" exit ;; update) command=$1 shift ;; list | cache | remove | depends | listall | download | listfiles |\ show | mirror | search | install | category | rdepends | searchall ) if [[ $command ]] then pks+=("$1") else command=$1 fi shift ;; *) pks+=("$1") shift ;; esac done set -a if type -t apt-$command | grep -q function then readonly arch=${HOSTTYPE/i6/x} apt-$command else printf "$usage" fi
- 第三步:给文件加执行权限
chmod +x apt-cyg
如果报Wget无法使用
如果这个时候你还报wget无法使用,则打开cygwin安装包,按照下列图所示步骤将wget安装上即可,安装过程中,需要将cygwin控制台退出。
Trillinos编译
上述步骤,我们编译的前置库除了trillions以外的库就都准备好了,接下来我们来编译Trillinos库,这个库我们只能编译12.12.1版本的,其他版本不保证兼容
编译Trillinos其实就是四步
- 创建一个文件夹build mkdir build
- 执行cmake脚本
- make
- make install
我们这里只演示串行的编译
按照上面步骤,我们创建build文件夹,并且在build文件夹中创建build.sh脚本,之后将下面的脚本填入脚本,之后执行脚本即可。
#!/bin/sh SRCDIR=$HOME/Trilinos12.12/Trilinos-trilinos-release-12-12-1 ARCHDIR=$HOME/XyceLibs/Serial FLAGS="-O3 -fPIC" cmake .. \ -G "Unix Makefiles" \ -DCMAKE_C_COMPILER=gcc \ -DCMAKE_CXX_COMPILER=g++ \ -DCMAKE_Fortran_COMPILER=gfortran \ -DCMAKE_CXX_FLAGS="$FLAGS" \ -DCMAKE_C_FLAGS="$FLAGS" \ -DCMAKE_Fortran_FLAGS="$FLAGS" \ -DCMAKE_INSTALL_PREFIX=$ARCHDIR \ -DCMAKE_MAKE_PROGRAM="make" \ -DTrilinos_ENABLE_NOX=ON \ -DNOX_ENABLE_LOCA=ON \ -DTrilinos_ENABLE_EpetraExt=ON \ -DEpetraExt_BUILD_BTF=ON \ -DEpetraExt_BUILD_EXPERIMENTAL=ON \ -DEpetraExt_BUILD_GRAPH_REORDERINGS=ON \ -DTrilinos_ENABLE_TrilinosCouplings=ON \ -DTrilinos_ENABLE_Ifpack=ON \ -DTrilinos_ENABLE_AztecOO=ON \ -DTrilinos_ENABLE_Belos=ON \ -DTrilinos_ENABLE_Teuchos=ON \ -DTrilinos_ENABLE_COMPLEX_DOUBLE=ON \ -DTrilinos_ENABLE_Amesos=ON \ -DAmesos_ENABLE_KLU=ON \ -DTrilinos_ENABLE_Amesos2=ON \ -DAmesos2_ENABLE_KLU2=ON \ -DAmesos2_ENABLE_Basker=ON \ -DTrilinos_ENABLE_Sacado=ON \ -DTrilinos_ENABLE_Stokhos=ON \ -DTrilinos_ENABLE_Kokkos=ON \ -DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES=OFF \ -DTrilinos_ENABLE_CXX11=ON \ -DTPL_ENABLE_AMD=ON \ -DAMD_LIBRARY_DIRS="/usr/lib" \ -DTPL_AMD_INCLUDE_DIRS="/usr/include/suitesparse" \ -DTPL_ENABLE_BLAS=ON \ -DTPL_ENABLE_LAPACK=ON \ $SRCDIR
在执行此脚本的时候可能会遇到两次报错 gehostname的错误,这错误在trillinos的issues中可以找到,但没有给出解决方案,我这里直接试了只使用winsock的头文件,可以编译通过,因此我们找到报错的时候显示的报错文件,将unistd.h注释掉,包含下面的头文件之后继续编译,即可完成Trillinos的编译。
#include <Winsock2.h> #pragma comment(lib, "ws2_32.lib")
Xyce的编译
如果你使用上面的脚本,记得到github上去下载release的Xyce源码,直接拉取源码可能会有未知的错误
我这里拉取的源码版本是7.7
- 也向Trillinos一样,解压之后创建build文件夹
- 但是在build之前需要先执行bootstrap,执行完成之后我们将目录移动到build文件夹内
- 创建build.sh,并在其中写入一下内容
../configure \ ARCHDIR="$HOME/XyceLibs/Serial" \ CXXFLAGS="-O2" \ CPPFLAGS="-D_BSD_SOURCE -D_GNU_SOURCE" \ CXX=g++ \ CC=gcc \ --enable-stokhos \ --enable-amesos2 \ --prefix=$HOME/XyceInstall/Serial
- 等待完成之后make
- make install
之后我们在=$HOME/XyceInstall/Serial文件夹内可以找到对应的Xyce.exe