pubscout
A simple yet effective means of extracting meaningful data from NCBI and PubMed.
Last updated 2 years ago by chriscates .
MIT · Repository · Bugs · Original npm · Tarball · package.json
$ cnpm install pubscout -g
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PubScout

A simple yet effective means of extracting meaningful data from NCBI and PubMed.

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Please note that PubScout is designed to be used as a tool alongside PubAnalyst. PubAnalyst requires Python 3 and SpaCy in order to run.

Usage

  1. Have Node installed.
  2. Install PubScout globally.
# For yarn
yarn global add pubscout

# For npm
sudo npm install pubscout --global
  1. Command line usage:
# Help menu
pubscout --help

# Scan a specific keyword on PubMed, make sure to put your search query in double quotes
pubscout --scan "late stage cancer"

# Return only 100 results
pubscout --scan "cancer" --amount 100

# Scan PMC instead of PubMed
pubscout --scan "cancer" --db pmc

# Download contents of research article by its ID
pubscout --download --index 9001

Additional Notes

Current Tags

  • 1.0.2                                ...           latest (2 years ago)

3 Versions

  • 1.0.2                                ...           2 years ago
  • 1.0.1                                ...           2 years ago
  • 1.0.0                                ...           2 years ago
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